Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance from promoter:178 nt. Distance to gene:37 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-10.70 kcal/mol
Antiterminator: Distance from promoter:150 nt. Size=42 nt. Delta G= -6.20 kcal/mol
Anti-antiterminator: Distance from promoter:146 nt. Size=18 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
The most likely promoter is: atgctg-tatagt. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
atgctgattatatgtatctcatctatagttacagtttcaataagtgaagttttccatgccccctattgtcaaatctttgcatatgattctcaaaaagaca
ttactaaaccaggccaaaattcatttactgcctcgcaaattaaaaattgcctcttgcaaaatggctttaggaatattaaacgattgcgtttagatgacaa
aggtatttggcgcgctttagtagaatttaaaaagtgccatttttttgtatctgtcgattattctggaatagttagcattcaaaATG
BH08560
Gene: BH08560 GI: 49475619 BI number: BH08560 GOG: ------- Description: hypothetical protei
aa
a g
cg
at
g |
ta
at ga
gt a a
at t t
tg gt
tg at
| c ta
tg ta
tt gc ta
a g cg c a
gc gc g a
cg t t cg
at t t gt
at a t cg
at g a gc
ta cg gc
tg at ta
tttttttgtatctgtcgattattctggaatagttagcattcaaaATG
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