                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:145 nt.    Distance to gene:21 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-10.20 kcal/mol
Antiterminator:    Distance from promoter:101 nt. Size=57 nt.     Delta G=-14.50 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: tttttc-gaaaat. It has a score value of 61.58 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tttttctcttgcacttctgttgtgaaaattttagggaatatgcatcaagtaaatgtaaatggCGGAGCGTAGCGCAGCCTGGTA
GCGCACCTGATTTGGGATCAGGGGGTCGTAGGTTCGAATCCTATCGCTCCGACCAtatt
tgctttggtgtgagagagtggaccaattgggtgcgtgtggtgagaaattgccatttaagcgttttctaatttgagggaaaagaaccATG

    BH09520 Gene: BH09520     GI: 49475707     BI number: BH09520     GOG: KOG3389     Description: NADH-ubiquinone oxidoreductas ag g  a a  g gt tg g  g ta gc gc ta ta |  t |  t |  g tg cg        aa gt       g  a tg        at t  c       gt tg        tg at        gc tg        gc At        ta Cg        gt Cg       |  t At       |  t G  |      t  a C  |      g  a Cg        cg Ta        gc Cg        tg             ttttctaatttgagggaaaagaaccATG     ..................................................................................................................