Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance from promoter:136 nt. Distance to gene:62 nt. Distance to run of Ts=2 nt. Size=28 nt. Delta G= -7.00 kcal/mol
Antiterminator: Distance from promoter:121 nt. Size=25 nt. Delta G= -4.90 kcal/mol
Anti-antiterminator: Distance from promoter:56 nt. Size=72 nt. Delta G=-18.50 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTCG-TAAAAT. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTCGATCCTGTTTCGCCCCCACTAAAATATAAAAAAACAAATTATATTTTGGTGGA
GGCGCCGGGTACCGCCCCCGGGTCCAATAAGCTTATTTCATTGTCCATTTATTACCAT
AGCTGGCAAGCCAGCTCTTTAAGTATAGATgaagaacagcttttggaaaaggggggttgttaatattttaaatcctct
aattatttagaagctatatgatgcggttgtaaaatacagccgctaattcttggagaggagatggtgtagaATG
BH11020
Gene: BH11020 GI: 49475836 BI number: BH11020 GOG: NOG07121 Description: hypothetical protei
AA
C G
GC
GC
TA
CG
GC
AT
T C
A T
C T
C |
A |
T |
T |
AT
TA
TA
TG
AT
C A
C T
T A
G |
TG
TA ta
AT a a t
Cg a a a t
Ta g a t t
Ta g g t t
Tg tg g a
| a tg ta
A a tg ta
T c tg gt
Ta cg gc
Cg gt gc
Gc at gt
At cg gc
At at gt
aattatttagaagctatatgatgcggttgtaaaatacagccgctaattcttggagaggagatggtgtagaATG
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