                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:160 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G=-10.80 kcal/mol
Antiterminator: Size=18 nt.     Delta G= -6.60 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -6.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCCTATTGCATTGATAGGTTGGCTTAATACGATAAAAACACACTGTTGTATTCGCTAT
GGAAAAGAGAGGTGATGTTTGATAACAGGTTTCGGGTACAGCTAAAAAGAGCTGTTTT
TTGCTTTTATAAGGGCTGTTTTTTTGCATttaaaaccttaggagggcttgtgagattagaaaaaatatatcaatataaa
gtagaaagcttttaatgcaacgcaagctttatcttttgcagagtttaagaaaagcaattttttcaaaatcctaacctctcaacacgcaatattaaagaga
aatttATG

    BH11380 Gene: BH11380     GI: 49475867     BI number: BH11380     GOG: COG0488,COG1245     Description: ABC transporter, ATP-binding protei TG G  A G  T A  G GT AT GT A  G A  A                 TT A  T                T  T A  A                G  T G  A                T  T GC                  CG TA                  GC |  G                 AT |  G                 GT A  T                 AT T  T                 AT C  T                |  A GC        AA       |  T CG       A  A      A  A TG       A  G      A  A TG        TA       A  G AT        CG        TG TA        GC        CG GC        AT        GC TA        CG        AT TG        AT        CG                         TTTTTTTGCATttaaaaccttaggagggcttgtgagattagaaaaaatatatcaatataaagtagaaagcttttaatgcaacgcaagctttatcttttgcagagtttaagaaaagcaattttttcaaaatcctaacctctcaacacgcaatattaaagagaaatttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains ... can be seen here [R] COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_henselae_Houston-1                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:183 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -6.60 kcal/mol Antiterminator: Size=34 nt.     Delta G= -3.70 kcal/mol Anti-antiterminator:   Size=43 nt.     Delta G= -6.90 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TCCTATTGCATTGATAGGTTGGCTTAATACGATAAAAACACACTGTTGTATTCGCTAT GGAAAAGAGAGGTGATGTTTGATAACAGGTTTCGGGTACAGCTAAAAAGAGCTGTTTT TTGCTTTTATAAGGGCTGTTTTTTTGCATttaaaaccttaggagggcttgtgagattagaaaaaatatatcaatataaa gtagaaagcttttaatgcaacgcaagctttatcttttgcagagtttaagaaaagcaattttttcaaaatcctaacctctcaacacgcaatattaaagaga aatttATG     BH11380 Gene: BH11380     GI: 49475867     BI number: BH11380     GOG: COG0488,COG1245     Description: ABC transporter, ATP-binding protei TA C  T G  G CG TA         A TA       C  G A  A      A  G T  A      A  T G  G      T  T T  A       AT T  G       GC G  A       TG TG       T  G CG       T  G       AA AT        GT       A  A CG        TA       A  G |  A      A  |       TA AT        GC        CG CG        TA        GC AT       G  G       AT AT        GC        CG AT        AT        AT                         TTTTTGCTTTTATAAGGGCTGTTTTTTTGCATttaaaaccttaggagggcttgtgagattagaaaaaatatatcaatataaagtagaaagcttttaatgcaacgcaagctttatcttttgcagagtttaagaaaagcaattttttcaaaatcctaacctctcaacacgcaatattaaagagaaatttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains ... can be seen here [R] COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog ... can be seen here     ..................................................................................................................