Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:184 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G= -6.10 kcal/mol
Antiterminator: Size=28 nt. Delta G=-13.30 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G=-18.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTAAAAGCGCGTTCAACACTAGCTGAAGCGATGGCTGCTGTTTCTCGGGTGAATGAGA
GGCGCATTGAGGCCGCGGCCGATATTTGGTTGGCACGGCAAAAAGATCGTGCTCTTTT
ATGTGTACGCTTCGATTTGATCGCCATTTTACCGTGGCGTTGGCCGCAGCATATTCCA
GCATTTTTTATGTCTAATAAATAAgagtttctctatcgttttaaccatggtagatggaaaatatcttgtttatacacatgcg
ttagaaaaagtgcctaataatttgagcgctatgaggagtgaaagATG
BH12340 --- proC
Gene: BH12340 GI: 49475948 BI number: BH12340 GOG: ------- Description: hypothetical protein
Gene: proC GI: 49475947 BI number: BH12330 GOG: ------- Description: Pyrroline-5-carboxylate reductas
A
G G
T A
A G
A G
GC
TG
GC
G A
G T
C T T
T | T T
CG A G
TA TG
TG AT
TG GT AA
GC CG A A
T C CG A G
CG GC C A
GC G A GT
TG C | GC
CG GC CG
GC CG AT
GC CG CG
TG GC GC
TCTTTTATGTGTACGCTTCGATTTGATCGCCATTTTACCGTGGCGTTGGCCGCAGCATATTCCAGCATTTTTTATGTCTAATAAATAAgagtttctctatcgttttaaccatggtagatggaaaatatcttgtttatacacatgcgttagaaaaagtgcctaataatttgagcgctatgaggagtgaaagATG
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