                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:178 nt.     Distance to run of Ts=1 nt.   Size=28 nt.     Delta G=-10.80 kcal/mol
Antiterminator: Size=23 nt.     Delta G= -5.10 kcal/mol
Anti-antiterminator:   Size=62 nt.     Delta G=-12.91 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAATCCACTAATGTCTCAATAGCAGCACAAGATCCCGCAACAGTTCCATTAATTCCCT
CTTGTGCTAAAAGGAGGGTACCTTTGATATCCTTTGCTTGACATAAATCCAGCAAAGG
CTTTTGTAATTGACGGTAATGCTTCAAATCCGCAAAGCAATAAAGAGCAGCAACTTTA
AAATTCTTTTCCATagttttggcataacgtgggtttcattcaatttcaagacttattcatttactctttaagatattgtgcttaatcaaa
ctatccttacccatcatttcttggagaaaaaacaccATG

    eda Gene: eda     GI: 49475976     BI number: BH12770     GOG: COG0800     Description: 2-keto-3-deoxy-6-phosphogluconate aldolas   T T  C G  C A  A C  T A  T A  A C  A G  T C  T C  C C  C T  C AT GC AT AT CG AT                  TA CG                 A  A GC         T       C  A AT       T  T       AT C  A      C  G       GC G  A      C  A      T  C A  A       AT        TA T  A       TA        CG A  G       GT        GC A  |       GC        TA CG        GC        TA TA        AT        TA CG        GT        CG TG        GT        CG                         CTTTTGTAATTGACGGTAATGCTTCAAATCCGCAAAGCAATAAAGAGCAGCAACTTTAAAATTCTTTTCCATagttttggcataacgtgggtttcattcaatttcaagacttattcatttactctttaagatattgtgcttaatcaaactatccttacccatcatttcttggagaaaaaacaccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase ... can be seen here     ..................................................................................................................