                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:161 nt.     Distance to run of Ts=1 nt.   Size=34 nt.     Delta G=-10.10 kcal/mol
Antiterminator: Size=38 nt.     Delta G= -8.60 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -5.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGAGCAGGCAGTGCTTCTTCCTGAATTTCTAAGTAAAATTGGCGTAATTTCCGTGCTA
TCTCGCTATTGACACCGAGAAGATCCTCTCCAAACGTAAAATGATTGGTGAGATTTTT
TTCATCACGGTCGTTCATtttttacccccctaatccatataataagtagcagctagaacaatttttcgccttatagttgtaaatatg
cttatctgtaaaaagttccatacgaacagaggaactttttcctctgtgaaggatttcgatcaacaaagtgcttcaaatgtcaaaggagttagaaatcAT
G

    BH13850 --- BH13860 Gene: BH13850     GI: 49476051     BI number: BH13850     GOG: -------     Description: Sensory transduction regulatory protein Gene: BH13860     GI: 49476052     BI number: BH13860     GOG: COG3920     Description: Sensory transduction histidine kinas TG T  A A  C T  A C  C GC CG TA CG         A TA       A  A A  |       TA        TT TA        GT       T  T CG        CG        AT |  A      A  A       GT G  T       AT        AT T  C       AT        GC G  C       CG        TA C  T       CG        GT C  C      T  T       GC T  T       CG        TA T  C       TA       |  C T  C      C  |      |  G A  A       CG        TG A  A       TA        AT TA        AT        GC GC        GT        TG CG        AT        AT GT        AT        AT                         CATtttttacccccctaatccatataataagtagcagctagaacaatttttcgccttatagttgtaaatatgcttatctgtaaaaagttccatacgaacagaggaactttttcctctgtgaaggatttcgatcaacaaagtgcttcaaatgtcaaaggagttagaaatcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG3920 Signal transduction histidine kinase ... can be seen here     ..................................................................................................................