Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:165 nt. Distance to run of Ts=2 nt. Size=33 nt. Delta G=-10.80 kcal/mol
Antiterminator: Size=45 nt. Delta G= -3.57 kcal/mol
Anti-antiterminator: Size=41 nt. Delta G= -9.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aagaacaaccaaggagcctagaattttgctagtatcgtgatgccaatttatagagcatctgctttcagagctgcttaaagattgttcgaatccttcctct
tgacagaatatgctgaaggagaggagaaatttttagagcaaagaaggtgctccaatttctgtacacgcgtgatctgagcttctggagtgcttattttaag
aactgtttaaaaagcttgcgaattctttctctcaaaagaatatgttttttgcgggagagatgcttaaaacgcctcacacgcaaaaggattatcattgccc
ATG
BH14000
Gene: BH14000 GI: 49476064 BI number: BH14000 GOG: ------- Description: hypothetical protei
tg
tt t t
c t at
gc gc
ta a g
cg a a
ta a a ta
a | t t a t
cg t c a g
gc c c gc
at g t at
| g t t cg
gc c c | a
at gc a a
| t at g g
t a gc tg
a a | t ta
ta at cg
tg cg ta
ta ta cg
at t c cg
at ta ta
cg cg tg
aaatttttagagcaaagaaggtgctccaatttctgtacacgcgtgatctgagcttctggagtgcttattttaagaactgtttaaaaagcttgcgaattctttctctcaaaagaatatgttttttgcgggagagatgcttaaaacgcctcacacgcaaaaggattatcattgcccATG
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