Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:26 nt. Distance to run of Ts=0 nt. Size=15 nt. Delta G= -7.90 kcal/mol
Antiterminator: Size=21 nt. Delta G= -4.20 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G= -7.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ggctgttgcgtgggggttgaagcagatgcgcagtgggtgagatgactgtgtggagagcttggagccgatatgggccggggcttttaagacgtctgtctag
aaacttttgagacagatctataggagcttgagggtgtttatgcaatgagaagatcgttcaaagggggaggcaaagatcatcaataaaaataatataaaaa
cacttaataacaaattcactctctgaaaaggaaaaatgtggagtgttaacaaccggcgctttgccgggttttttatgtcaataaacttttagaggataaa
ATG
BH14010
Gene: BH14010 GI: 49476065 BI number: BH14010 GOG: ------- Description: expressed protei
tg
c a
t a
c a
ta
cg
a |
cg
ta
ta
| a
a a
a a
at
cg
at
a g a
t | c a
a | a c
a | a c t
tg tg c t
ta tg g t
cg gc cg
at tg gc
cg gc gc
at at cg
at gt cg
gttttttatgtcaataaacttttagaggataaaATG
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