Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:197 nt.     Distance to run of Ts=1 nt.   Size=17 nt.     Delta G= -6.10 kcal/mol
Antiterminator: Size=29 nt.     Delta G= -9.00 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G=-14.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TACTGAGTTCTAATCAGCTTTTTGCTTTTAGTGCTGAGAAGCACttggacatggcaaaaactcccgg
aatccgggaaagctcacataatgagctaatttttttagaacttagggctttacttcccttattgatcgttgcgtaaccgaccaaaaacatctcattaata
aaataatcttagaatattagcaatgaaaatttaaacagtctttgttttcgaaaatgctctaaagaccgcagaggcatcgtagcagagagacatcgtagcg
aagatacatcgtaccggagatacaagaggagaaATG

    BH14360


Gene: BH14360     GI: 49476098     BI number: BH14360     GOG: -------     Description: Resolvase fragment homolo


 AG
G  A
 TA
 CG
 GC
 TA
 GC
 At
|  t
|  g        a
|  g      a  t
|  a       gc
T  c       gc
T  a       cg
T  t       cg
 Tg        cg
 Cg        ta
 Gc       c  a        t
 Ta       a  a      a  a
 Ta       a  |      c  a
 Ta       a  |       at
 Ta       a  |       cg
 Ta       a  |       ta
C  |       cg        cg
 Gc        gc        gc
 At        gt        at
                        aatttttttagaacttagggctttacttcccttattgatcgttgcgtaaccgaccaaaaacatctcattaataaaataatcttagaatattagcaatgaaaatttaaacagtctttgttttcgaaaatgctctaaagaccgcagaggcatcgtagcagagagacatcgtagcgaagatacatcgtaccggagatacaagaggagaaATG
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