Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance from promoter:94 nt. Distance to gene:12 nt. Distance to run of Ts=0 nt. Size=18 nt. Delta G= -9.10 kcal/mol
Antiterminator: Distance from promoter:63 nt. Size=42 nt. Delta G= -8.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttaaat-taagat. It has a score value of 70.28 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttaaattttcattgctaatactctaagattattttattaatgagatgtttttggtcgattacgcaacgatcaataagagaagtaaaaccctaaattctaa
aaaattagcttattatgtgagctttcctggaattccgggagtttttgctatgtccagGTG
BH14380
Gene: BH14380 GI: 49476100 BI number: BH14380 GOG: ------- Description: DNA binding protei
a
t t
tg
at
tg
ta
cg
gc
at
t t
t t
a c
a c
a |
a | at
a | a t
at gc
tg gc
cg tg
ta cg
ta cg
at ta
at tg
tttttgctatgtccagGTG
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