Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:76 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=64 nt. Delta G= -6.80 kcal/mol
Anti-antiterminator: Size=38 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tttgcacttttcaacagtgttataaaaaagcccctttgtgtgatgatgctttgttttggttggcagaagcgttgttgagataaaaacgttatcacaaagc
agcacaaatttatcttaacgtatggtatacagacaaaaagaaactttacacttctgaaattttgctgaaattagcaaggaatatgattgctcttgaacag
aataaagagttttgttcactttttgtagaaagatcaaagcatcagaaaatgttggagtctgttttttgtaaacctctaaaaaggaaaggagtcgtttacg
GTG
BH14760
Gene: BH14760 GI: 49476135 BI number: BH14760 GOG: ------- Description: hypothetical protei
aa
a t
gt
ta
cg
gc
ta
ta
tg
tg
| a
| a
| t
| a
| t
| g
| a
| t
| t
t | g
t a | c
t c | t
c a | c
a c | t
at | t
at a g
gc a a
at a a
| g gc a
| a ta a g
| a cg a a
| a ta tg
at ta at
at c | at
at a | gt
at c | at
cg at cg
a | ta at
gc ta at
at ta gc
cg cg ta
ctttttgtagaaagatcaaagcatcagaaaatgttggagtctgttttttgtaaacctctaaaaaggaaaggagtcgtttacgGTG
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