Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:97 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G= -8.50 kcal/mol
Antiterminator: Size=48 nt. Delta G=-10.10 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G= -7.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGGAGGCTGGTGCTTACGGTGCTGTGATGGCAAGCACTTATAATAGCCGACTTTTGGT
GCCAGAAGTTCTCGTTCAGGATACGCGTTATGCGGTTATTCGTCCACGTCTTGATTAT
GCACAATTGATAGGCTGTGATTATGTTCCAGATTGGATTTGAgttcagatgagattgaacattgttcaa
tgtttttggtcttatttttactaaactttgatgaaacaatttatttcctggaaattgtcttgtatgaattttataattgtaattcatcactctaaaaggg
gacaaatatttgtctATG
BH16160
Gene: BH16160 GI: 49476268 BI number: BH16160 GOG: NOG14524 Description: hypothetical protei
AT
G A
T G gt
T G A t
A C Gc
AT Ta
CG Tg
AT Ta
CG At
| A G g tt
| T G a g c
GT Tg ta
TA Ta ta
AT At at
TG Gt cg
T T A | at
AT C | at
GC Cg gt
T C Ta | t
TA Ta | t
CG Gc tg
TA Ta tg
GT At at
C | T t gc
AT Tg at
CG At gt
CG Gt ta
tttttactaaactttgatgaaacaatttatttcctggaaattgtcttgtatgaattttataattgtaattcatcactctaaaaggggacaaatatttgtctATG
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