Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:147 nt.     Distance to run of Ts=0 nt.   Size=36 nt.     Delta G= -9.10 kcal/mol
Antiterminator: Size=36 nt.     Delta G= -7.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCTCTTTTCGACGTTTTAAGTTTTGACGCAATTGTTGCGCCAACCTTTCCTGGCGCTG
TTTTTCTTTTTGTTCTTGGTGATTCATTTTTTCTTGCTTTTGGTTTTGATGCATTTGT
GTCATTGCGCAGCCTTTTGCGTAGTCTTGAGCATTTTTAAGCAAcccactgctgttatataaaggtt
atagaaagaaagaatatatgtcatgacacaagacgtgttttctttcaagaatgcataaatgctctcttgcctatttcatgacaatatggcacaaggcagc
atagcgactaagaaaatGCT

    _v49


Gene: _v49     GI: BH14440     BI number: BH14440     GOG: -------     Description: tRNA-Th



 TT        CT
A  T      C  T
 CG        GT
 GT        AT
 TG        CG
 AT        GC
 GC        CG
 TA        GT
T  T       TA
T  T       TG
 TG        AT
 GC       |  C
G  G      |  T
T  C      C  T
T  |      T  G
T  |      G  A
 TA        TG
 CG        GC
 GC        TA
            TTTTTAAGCAAcccactgctgttatataaaggttatagaaagaaagaatatatgtcatgacacaagacgtgttttctttcaagaatgcataaatgctctcttgcctatttcatgacaatatggcacaaggcagcatagcgactaagaaaatGCT
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