                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:71 nt.     Distance to run of Ts=1 nt.   Size=36 nt.     Delta G=-12.00 kcal/mol
Antiterminator: Size=32 nt.     Delta G= -3.50 kcal/mol
Anti-antiterminator:   Size=36 nt.     Delta G= -6.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tatcatttgcggagatatcgcaatcatgcttggcttaccaaacttaccctgtcgcggaaagaattcagcttgattgaaatgatgagattcaaggactttc
ataggtttaaattgtaaactcaatcattcattatgaaaaacaccgtatcgcaaaaagaatagaattttaaaaagcgatatagacaaacacctcatttatg
tgctatatgtcctatgaggtgtattcttttagatatacctttataaggtgactgggttttttcctattatttatgatactgaaacaaagcaggataaaca
GTG

    rpsU Gene: rpsU     GI: 49473802     BI number: BQ01250     GOG: -------     Description: 30s ribosomal protein s2                       c                     g  t ga                  ta a  a        a        gt t  t      c  c       ta at       a  c       at at       a  t       tg gt       a  c      |  t a  a      c  a      |  c a  a       at       |  c a  a       gt       t  t a  a       at        ta a  a       ta        at cg        at        cg gc        tg        ta cg        at        cg ta       g  |       cg at        cg        at ta        gc        cg gt        at        at                         attcttttagatatacctttataaggtgactgggttttttcctattatttatgatactgaaacaaagcaggataaacaGTG     ..................................................................................................................