Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:165 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G= -6.70 kcal/mol
Antiterminator: Size=60 nt.     Delta G=-12.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGTCCATAAGCTATAACGGCTTTGGCGATATCATGATGGTCTGTTGCAACGATAGTAC
GTCCGAATGCGGCTTTTTTTGCTTGTTCAGCAACATGAACAATCATCGGCTTTCCAGC
GATCTCAGCGAGAGCTTTTTGGGGGAGACGGGTTGAGCCTATACGGGCGGGGATGACA
ATAATTGGTTTAAGAGCCATtacaaaattccaaatgccgtgtgtgtgatgtgtttataatattgtgttttatagagaaaaagctt
aaactaaaagcagtaatgaaaatataaacgtttgaatttttATG

    BQ02240


Gene: BQ02240     GI: 49473889     BI number: BQ02240     GOG: COG3474     Description: hypothetical protei


 AA
C  C
G  A
 AT
 CG
 TA
 TA
 GC
 TA
 TA
C  T
 GC
 TA
T  T
T  C
T  |
T  |
T  |
 TG
 CG         C
 GC       T  T
 GT       A  C
C  |      G  A
G  |       CG
T  |       GC
 AT       A  |
 AT       C  |
 GC        CG
C  C       TA
C  A       TG
 TG        TA
 GC        CG
 CG        GC
            TTTTTGGGGGAGACGGGTTGAGCCTATACGGGCGGGGATGACAATAATTGGTTTAAGAGCCATtacaaaattccaaatgccgtgtgtgtgatgtgtttataatattgtgttttatagagaaaaagcttaaactaaaagcagtaatgaaaatataaacgtttgaatttttATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[C] COG3474 Cytochrome c2 ... can be seen here

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