Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance from promoter:125 nt. Distance to gene:80 nt. Distance to run of Ts=0 nt. Size=36 nt. Delta G= -9.10 kcal/mol
Antiterminator: Distance from promoter:124 nt. Size=21 nt. Delta G= -5.70 kcal/mol
Anti-antiterminator: Distance from promoter:81 nt. Size=53 nt. Delta G=-10.60 kcal/mol
Nomenclature/Definitions
The most likely promoter is: gtgata-tattat. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gtgatactattgtacaggactcatattatcatgcaggcagaatatcgttacacgttgatttttataaaaggaaatttgtaaacaacaaataggagtttaa
ctgtaactccaatagcttcggcatatatgtaacttacaaactttcctgtagaacgaagttgttaagaggcttcgtctttaacaaggcttctattttcata
actgtgtcgtttttactacagatttttttgcataggtgtgtaacatatgcttcataaataaaggagcaaagtttATG
hbpA
Gene: hbpA GI: 49473904 BI number: BQ02420 GOG: ------- Description: Hemin binding protein
c
a t
at
ta
gc
ta
| a
| a
| c
| t
| t
| t t
| c t c
| c cg
at gt
tg gc
at at
ta gt
a g a |
c a at
g a a ta
gc t a ta
cg t g gc
ta g a ta
ta tg | a
cg tg | g
gt gc tg
at at gc
tg at at
at gc at
at cg gc
tattttcataactgtgtcgtttttactacagatttttttgcataggtgtgtaacatatgcttcataaataaaggagcaaagtttATG
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