                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-16.60 kcal/mol
Antiterminator: Size=66 nt.     Delta G=-10.03 kcal/mol
Anti-antiterminator:   Size=41 nt.     Delta G= -4.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AACTATAAAACCAATGATTTTCGTATTGGTGTAGCTTATAAATTCTAAtttattataagactaa
gtttttaaaaggctctgccagcggtggagcctttatttttttgagagaatcattttggggttttctttcttgatagtttcatgataaagcccgtgaaatg
tgataatatatcttcttgatcgctgcctatacgaataattcgctcggctttcctcgtagatcaaaaaaccagagttgcagggttcagggaagttatgaaa
aaatgaaatcgtaaaagtggacaggaatatttcacaATG

    ileS Gene: ileS     GI: 49473906     BI number: BQ02440     GOG: COG0060     Description: Isoleucyl-tRNA synthetas             a           t  t           t  a           a  a           t  g           t  a           t  c           A  t           A  a            Ta            Cg           T  t           T  t            At ca        At a  A       At c  T       Ta t  G      |  a t  C      A  a tG        Ta aT        Tg tA        Cg         g aT        Gc       a  c aT        At        cg g  G      T  c       cg g  G      G  t      g  t aT        Tg       t  g cG        Gc        cg aT        Gc        ta g  A       Ta        cg g  |      T  |       gc tG       A  |       gc gC        Tg        at aT        Gc        at aT        Cg        at                         atttttttgagagaatcattttggggttttctttcttgatagtttcatgataaagcccgtgaaatgtgataatatatcttcttgatcgctgcctatacgaataattcgctcggctttcctcgtagatcaaaaaaccagagttgcagggttcagggaagttatgaaaaaatgaaatcgtaaaagtggacaggaatatttcacaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0060 Isoleucyl-tRNA synthetase ... can be seen here     ..................................................................................................................