                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:92 nt.     Distance to run of Ts=1 nt.   Size=24 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=23 nt.     Delta G= -3.50 kcal/mol
Anti-antiterminator:   Size=48 nt.     Delta G= -6.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACTATGGCCTGTCACGGCTCAATACGGTCAGGGCGTCTTTTACGTGCCGAAGAAATGA
ATGCACTGTTACGACAAATAGAAGCAACACCCCATACAGGCACGTGTAACCATGGCCG
TCCTACTTATATTGAACTCAAATTAGCTGATATAGAACGGCTTTTTGGCAGAAAATAA
gttctcgtcgttttggcgaagagaaatattttttaattcactctcgactttctaatacatctctaatacatcttatggcactttatttaaatcatctctc
ataaagataaaaaaggattataaagaATG

    BQ02560 Gene: BQ02560     GI: 49473917     BI number: BQ02560     GOG: COG3908     Description: hypothetical protei TA A  G T  A A  A GC TG CG GC AT T  T T  | AT AT AT        TA        tt CG       A  A      t  g TG       A  g       tg |  C       At        gc C  A       At        cg A  G       Gc        ta A  A       At       g  a G  A      |  c       cg TA        Cg        ta TA        Gt        cg AT        Gc        ta TA        Tg        ta                         atattttttaattcactctcgactttctaatacatctctaatacatcttatggcactttatttaaatcatctctcataaagataaaaaaggattataaagaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG3908 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................