                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:183 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G= -7.60 kcal/mol
Antiterminator: Size=48 nt.     Delta G=-10.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tttgggcaattataattgctctttccgtcaaataaacttgataggtatattgcgatacgttagtgtcttcttatcaaggtgttttcttatcgtggtgatg
acacgaggaaatctttttcaagaatcaatctatgaagcatgattgagaggaatatttttcacacaggttcccgcatatcttaagcttacgaaataagtcg
agaatatttttgatctttgtctaaagagactattggcacagcctttaataataaggcgtttttctttaaagaaaggcacgtcattttaaaggggagaaca
ATG

    serC Gene: serC     GI: 49473928     BI number: BQ02790     GOG: COG1932     Description: Phosphoserine aminotransferas ta t  t c  c ta ta cg tg g  t t  g        a gt       g  t at       t  g t  t      g  a t  t       gc g  c       ta c  t       gc at        cg ta        ta at       a  | gc       t  | cg        tg g  t       cg t  g       ta tg        ta at        ta             tctttttcaagaatcaatctatgaagcatgattgagaggaatatttttcacacaggttcccgcatatcttaagcttacgaaataagtcgagaatatttttgatctttgtctaaagagactattggcacagcctttaataataaggcgtttttctttaaagaaaggcacgtcattttaaaggggagaacaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [HE] COG1932 Phosphoserine aminotransferase ... can be seen here     ..................................................................................................................