Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance to gene:194 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G= -8.50 kcal/mol
Antiterminator: Size=44 nt. Delta G=-10.40 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G=-11.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aactccagaaacggttgaatattatgcgcgtgatgtttctgcttttttgatgtgggtagctgatctccacatggaaattcgtaaaaaaattggttttcat
gttattttatttttaatcatttttgtttggcttgtttatattttaaaagtttggatttggaggagtttagaagaggaatttgagaaggagaagaaagatt
gaaggagaaaaaaggctaggattactggtcttaaaagaatatagggaacaaatccagttacgatgcattgaggttttgtaaagtaaaatggagaattaaa
ATG
BQ03250
Gene: BQ03250 GI: 49473970 BI number: BQ03250 GOG: NOG08818 Description: hypothetical protei
cg
g c
tg
at
tg
ta
at
tg t
at c g
at g a
gt a t
| c t c
t t gt
tg gc aa
gc gc a a
gt ta a a
c t gc ta
at ta gt
at at c t
at g g t g
gt tg tg
| g ta at
| a ta at
at ta at
cg | t gt
| t t t gc
cg t c ta
tg cg at
cg gt cg
at ta at
tattttatttttaatcatttttgtttggcttgtttatattttaaaagtttggatttggaggagtttagaagaggaatttgagaaggagaagaaagattgaaggagaaaaaaggctaggattactggtcttaaaagaatatagggaacaaatccagttacgatgcattgaggttttgtaaagtaaaatggagaattaaaATG
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