Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance from promoter:174 nt. Distance to gene:22 nt. Distance to run of Ts=3 nt. Size=32 nt. Delta G=-10.40 kcal/mol
Antiterminator: Distance from promoter:148 nt. Size=40 nt. Delta G= -6.80 kcal/mol
Anti-antiterminator: Distance from promoter:110 nt. Size=57 nt. Delta G=-13.50 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGACC-AAAGAT. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGACCGCATCAAGATTGAACAAAGATGCGTTTCTGTTCTGAACGATCACCTGCAGAC
GAAGTTAGCTTTGAGTGAAAAAGACAAAAAATGCGTGGAAAAAATGCTTGAGGGGGTT
GAAAATGAAAGCTTACGCCAATCACTTTATGAACTTGGCTGTTGCATTTTTGCAGAAA
AAAAGAGTAAATAGagtagagtatcttccctatttttctttagtataaagagtatagggttcttatttttttaataacaacagaaaagta
ttatttATG
BQ03750
Gene: BQ03750 GI: 49474015 BI number: BQ03750 GOG: ------- Description: hypothetical protei
TT
T T
AT
CG
GC
TA
TG
| A
| A
G A t
T A g a
C A a t
G A gc
G A at t
TG t t g a
TA g c at
CG a c ta
AT Gc ta
A A At ta
G A Ta cg
TA At ta
AT At tg
TA At t t
TG T | t |
Ta Gt ta
Cg At at
At Gc ta
| a At cg
Cg At cg
Ta At cg
ttcttatttttttaataacaacagaaaagtattatttATG
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