                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:171 nt.     Distance to run of Ts=1 nt.   Size=26 nt.     Delta G= -8.90 kcal/mol
Antiterminator: Size=35 nt.     Delta G=-10.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TATCAGCTAAAGAGGAAACAATATCAATCAGATAATCATCATCTCTTTTGCCGATAAG
AAAATCAGCAAGAACTTTTCCTTGTGGGGATAAGAGAGCTCCAGGGAAAATTTCTTGT
GGGGCGATTTTTGTCACATCTGTTGTGATAAGAGATTGCAGAAAATCTGTTGCTTCTT
CACCCGTAACTTTAATAACCTTACGTTTTTTAAAGCAAATGGCATTTTGTTTTTCAAT
CATggttcttgcctttctgctcaaagttacataatcgataaacgagaggatatttaaggagtacggctATG

    pyrC1 Gene: pyrC1     GI: 49474073     BI number: BQ04350     GOG: COG0044     Description: Dihydroorotas AG A  A T  G A  A G  G        A GC       A  T GT        AT GC        AT T  |       GC GC        GT TA        GT TG       |  G CG        AT CG        CG TA        CG TA        TG TA        CG TA        GC             GATTTTTGTCACATCTGTTGTGATAAGAGATTGCAGAAAATCTGTTGCTTCTTCACCCGTAACTTTAATAACCTTACGTTTTTTAAAGCAAATGGCATTTTGTTTTTCAATCATggttcttgcctttctgctcaaagttacataatcgataaacgagaggatatttaaggagtacggctATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG0044 Dihydroorotase and related cyclic amidohydrolases ... can be seen here     ..................................................................................................................