Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance to gene:191 nt. Distance to run of Ts=2 nt. Size=33 nt. Delta G= -8.92 kcal/mol
Antiterminator: Size=48 nt. Delta G=-11.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gatagtgcttgcagtagggttttgcactcagacagatcagatgaaattgccttgagagaggaattttcaaaccttttgactttttatttaaagaggtttg
tcatttttgatttatctgtgtttgttggaatgcgctgagaaaagtggagagaggctaaaaagtcagtttacaataaaaacatgcgattgcctttaacttt
agaagaaaatatacaagtaagatatggctatatttggtacattctttatacagtaagcatgaataattgaaagcaaatttaaaagcagtgagagaaagtg
ATG
tatA
Gene: tatA GI: 49474110 BI number: BQ04740 GOG: ------- Description: hypothetical protei
ag
g a
tg
ta
cg
cg
g a
t a
t t
at
at t
at t t
gc t a
ta t t
| a c t
| a a t
| c g a
| c ta
| t ta
at tg
gt ta
at cg
cg cg
ta at
a | at
gc at
at cg
tcatttttgatttatctgtgtttgttggaatgcgctgagaaaagtggagagaggctaaaaagtcagtttacaataaaaacatgcgattgcctttaactttagaagaaaatatacaagtaagatatggctatatttggtacattctttatacagtaagcatgaataattgaaagcaaatttaaaagcagtgagagaaagtgATG
..................................................................................................................