                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-14.30 kcal/mol
Antiterminator: Size=61 nt.     Delta G= -8.60 kcal/mol
Anti-antiterminator:   Size=53 nt.     Delta G= -4.84 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

aaacgataccacagcaagctatgtagaccaaatattttaaattatttttattttaaaatataacaaagatttgccttattcattggcgattgaggcagat
ttttttgccatctaacaataaaattctagacttacaaacataaatagggaaaaatgggtattgcatttattctaacatttcttattgcaccctttttata
agcaagcagctttccatcttaaaatattcaataatttacgctgatttataagtgtgataagctggagatgacaaaaaagtatggattcaaggcaaaagga
ATG

    argC Gene: argC     GI: 49474158     BI number: BQ05380     GOG: COG0002     Description: N-acetyl-gamma-glutamyl-phosphate reductas            tt           t  t            at            ta           t  t            at aA        at g  T       at g  G       ta a  g       ta a  c       ta a  a       ta a  a       at cg        ta gc        at gt       a  a a  a      a  | at       c  |       tg cg       c  |      t  g |  t      a  |      a  c ta       g  |       cg tg       a  |       ta a  a       ta       t  t gc        gc        at gc        ta        tg ta       a  a       ta |  a       ta        cg |  a       cg        cg at       |  a       gc ta        gt        ta gt        at        tg at        at        ta at        cg        at at        gc        gt                         tttttgccatctaacaataaaattctagacttacaaacataaatagggaaaaatgggtattgcatttattctaacatttcttattgcaccctttttataagcaagcagctttccatcttaaaatattcaataatttacgctgatttataagtgtgataagctggagatgacaaaaaagtatggattcaaggcaaaaggaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0002 Acetylglutamate semialdehyde dehydrogenase ... can be seen here     ..................................................................................................................