Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance to gene:103 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -6.30 kcal/mol
Antiterminator: Size=44 nt. Delta G= -5.13 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GATAAAGATCGTCGCTTTCTTAAAGCTGGTGACGTTTTTGATGATGATCAAATTAATT
CTTTCATTCAAGTAAAAATGCAAGAAGTCTTGCGCTACGAAACAACTCCACATCCTAT
CGAATTTGATATGTACTATTCCGTTTAAaaaataagttattcttttcaattaagaaatggagataaaaaatttccattt
ttgtggatatttttctcatcaaagggcacaagtggctttttgctcatgtgtttttcctttataaagtttagttgaatattttcaaatcaattattaaggt
ttccaATG
BQ07900
Gene: BQ07900 GI: 49474371 BI number: BQ07900 GOG: ------- Description: hypothetical protei
a
t t
t t
gc
at
at
| t
| t
| c
t a
a a
a t
a t
a a a
A a a a
A g a a
Ta ta
Ta at
Ta gt
Gt at
Cg gc
Cg gc
Ta ta
Tg at
ttttgtggatatttttctcatcaaagggcacaagtggctttttgctcatgtgtttttcctttataaagtttagttgaatattttcaaatcaattattaaggtttccaATG
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