Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance from promoter:89 nt. Distance to gene:106 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-18.90 kcal/mol
Antiterminator: Distance from promoter:64 nt. Size=37 nt. Delta G= -9.20 kcal/mol
Anti-antiterminator: Distance from promoter:22 nt. Size=53 nt. Delta G=-16.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgttg-catagc. It has a score value of 61.58 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgttgtttagaacattttatttcatagcaggaatatcgcatcgacattatggtcagtgcgagagggcaatcagggaacctcctcccccccccccgcgtg
gatcccttagattgtcgggcctggctgcggatttcctcagtcaggctttttagaattcagtattagtttataggttgaaaattgttttttatcaaaaagt
ctgatgaaaaatgcgttgtgggaatatgctttgtatatcttagttagggagagataATG
BQ08980
Gene: BQ08980 GI: 49474466 BI number: BQ08980 GOG: ------- Description: hypothetical protei
ct
c c
a c
at
gc
gc
gc
a c
c c at
t c g t
a | a g
a | t t
c | t c
gc cg
gc cg
gc cg tt
a c t | a t
g | a | gc
a | gc gc
gc gc c t
cg | t gc
gc | g ta
tg | g cg
g t t c gt
a g gt gc
cg cg ta
ta gc cg
gt cg cg
gc cg gc
tttttagaattcagtattagtttataggttgaaaattgttttttatcaaaaagtctgatgaaaaatgcgttgtgggaatatgctttgtatatcttagttagggagagataATG
..................................................................................................................