Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance to gene:23 nt. Distance to run of Ts=0 nt. Size=15 nt. Delta G= -7.90 kcal/mol
Antiterminator: Size=21 nt. Delta G= -4.10 kcal/mol
Anti-antiterminator: Size=62 nt. Delta G= -8.55 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gcttggaaaaagatcattgaagcagaaagagcaagaaaaacctctcaacgcaaaagtgcagggagaacacttttcaaggcaggaacgagagaaataaaac
atttcaaagcaaagatgcaatgagaatacttttaaaagcaggaaagagagagcaaatctctcaaagggggagggaaaagctacaaacaaaaaccataaaa
aacatagaaaaatggtccgccatttgaaaacaaaaaatggggaatgtcaataaccggcgttttgccggcttttttatttcaataattttaagaggttaaa
ATG
BQ11110
Gene: BQ11110 GI: 49474622 BI number: BQ11110 GOG: ------- Description: hypothetical protei
cc
t g
gc
gc
ta
at
at
at
a g
a a
g a
a a
t a
a c
c a
a a
a a
a a
a a
a |
a |
ta a
at t a
cg a c
cg a c t
a g cg t t
a g tg g t
a a gc cg
a a tg gc
at at gc
cg at cg
at gt cg
cttttttatttcaataattttaagaggttaaaATG
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