Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance from promoter:52 nt. Distance to gene:167 nt. Distance to run of Ts=1 nt. Size=32 nt. Delta G=-11.40 kcal/mol
Antiterminator: Distance from promoter:19 nt. Size=36 nt. Delta G= -3.90 kcal/mol
Anti-antiterminator: Size=50 nt. Delta G= -6.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaca-tagagg. It has a score value of 72.96 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgacaagaataagtctttttgttagaggagatatagtttttttacaattttcacttattcgttgtgctaatgaaatgtgttaatccgtacctttattgt
aaggtacgttttgcttttataatcacagtgaaaaagtttgtagcacagtgttataacgcaataacagattatgacagactgttgtttattacggggttat
ctcttacggcacagtgtatggtagtgagatgacatgtttaaagttagagcattgcgcaataggaatattgataaacggtgagtatgATG
rpmJ
Gene: rpmJ GI: 49474636 BI number: BQ11310 GOG: ------- Description: 50S ribosomal protein L3
at
t a
a g
gt
at
gt
gt
at g
gt t c
at gt
t | ta tt
ta ta a g
gc gt t t
ta cg ta
ta ta ta
| t ta cg
t t a a cg
t t t t at
t t t | ta
c c cg gc
ta at cg
gc cg c t
at t t t t
at t t at
ta ta at
at ta tg
cttttataatcacagtgaaaaagtttgtagcacagtgttataacgcaataacagattatgacagactgttgtttattacggggttatctcttacggcacagtgtatggtagtgagatgacatgtttaaagttagagcattgcgcaataggaatattgataaacggtgagtatgATG
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