Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:179 nt.     Distance to run of Ts=3 nt.   Size=24 nt.     Delta G= -6.50 kcal/mol
Antiterminator: Size=23 nt.     Delta G= -4.30 kcal/mol
Anti-antiterminator:   Size=51 nt.     Delta G= -4.54 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

caaattgcaggaaggggtttgtttatgatgttagcgtttacagtgtttgtattaaatatatggggttatggagttgcgtctctcatggaggggggaagtt
ggttcttttgttagtgttttggtggggacacgcattgaaaatgtgcatagttttggcaagatattttgatggggacgttgttgacggggatgaaatgata
agtcacgcaaaaaaagatttttcacaatagatgatccgccaaaaatacaggtacaaggacaatgtttgtgtagaagggttcgataaaattggtacaaaag
ATG

    priA


Gene: priA     GI: 49474714     BI number: BQ12280     GOG: COG1198     Description: Primosomal replication factor


  g
t  t
 gt
 at
 cg
 at
 ta
|  t
|  t
|  a
|  a
t  a
t  t
g  a
c  t
g  a
 at        gc        gg
 tg       t  g      t  a
 tg       t  t      a  g
g  g       gc        cg
 tg        at        tg
 at        gc        cg
 gt       |  t       tg
 ta        gc        cg
 at        ta        ta
 tg        at       g  a
 tg        tg        cg
 ta        tg        gt
                        tggttcttttgttagtgttttggtggggacacgcattgaaaatgtgcatagttttggcaagatattttgatggggacgttgttgacggggatgaaatgataagtcacgcaaaaaaagatttttcacaatagatgatccgccaaaaatacaggtacaaggacaatgtttgtgtagaagggttcgataaaattggtacaaaagATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[L] COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase ... can be seen here

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