                                                                        Gene putatively regulated by attenuation in B_quintana_Toulouse

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:179 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-10.70 kcal/mol
Antiterminator: Size=36 nt.     Delta G= -8.70 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G=-13.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCAGTTGAACCTCTTCTAAGGGGCGATTCATGTTTTGACATGTTTCAATAATGTCTTT
TTGGAGGTTTTTCCATGCTTCGACGGAAGGAATATACGGGGTAGCTTGTGTGTTCATt
tttttgtgctttgtcgtttttgttggggggattggggcgttatttgtaaaagctttgtaaaatacttagtgaaagatttactgaaaatcttgacgatgag
gttaatccatgatgaagcataataaaacaagtttttttgtttaattttattaaagagtataattatttaaagagtataataggaATG

    leuS --- BQ12300 Gene: leuS     GI: 49474717     BI number: BQ12310     GOG: COG0495     Description: Leucyl-tRNA synthetase Gene: BQ12300     GI: 49474716     BI number: BQ12300     GOG: COG5468     Description: hypothetical protei TT T  G TA GC TA AT CG T  T T  T AT GC |  A       TC |  A      T  C |  T      T  A       TA |  A      T  T      G  G |  A       TG        GC |  T       GC        GT CG        GT        GT GT        AT        CG GC        GC        AT GT       |  G       TG GT       |  A       AT AT        GC        TG AT        TG        AT T  T       TG        AT CG        TA        GC TG        TA       G  A TA        TG        AT CG        CG        At TG        TA        Gt                         ttttgtgctttgtcgtttttgttggggggattggggcgttatttgtaaaagctttgtaaaatacttagtgaaagatttactgaaaatcttgacgatgaggttaatccatgatgaagcataataaaacaagtttttttgtttaattttattaaagagtataattatttaaagagtataataggaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0495 Leucyl-tRNA synthetase ... can be seen here [S] COG5468 Predicted secreted (periplasmic) protein ... can be seen here     ..................................................................................................................