Gene putatively regulated by attenuation in B_quintana_Toulouse
Characteristics of the secondary structures
Terminator: Distance to gene:106 nt. Distance to run of Ts=1 nt. Size=31 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=48 nt. Delta G= -3.50 kcal/mol
Anti-antiterminator: Size=47 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aaagataatttatccctcttagggaacattatttgctcaactcattacagacaggaaagagtgaaatacatgatacttatgattctagccatactgttct
tttttaaatatacaaatatcaaattgtctttttaaagggtatttataatactattcagggaaatgtgatgaaaaaatcacaatttttcatttgttaattt
tttatctgattggatcaatgaaaaagaaaaatctcagatatttttaaaaaaaatcgaaaatgacttgaactttatgttgagaccgtttattcaccgccct
TGG
_v32
Gene: _v32 GI: BQ09880 BI number: BQ09880 GOG: ------- Description: tRNA-Se
a
t t
tc ta
a a ta
t a at
a a ta
at gc
at gt
cg | a
at | t
t c | t
a t g c aa
t | a a a a
at a g g a
at a g ta
at tg at
t t ta gc
t | ta ta
t | ta gc
ta | t | a
ta | g ta
ta t t at
cg cg at
t g ta at
t g gt gt
gt tg gt
ta ta gc
atttgttaattttttatctgattggatcaatgaaaaagaaaaatctcagatatttttaaaaaaaatcgaaaatgacttgaactttatgttgagaccgtttattcaccgccctTGG
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