Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance from promoter:109 nt. Distance to gene:48 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-16.90 kcal/mol
Antiterminator: Distance from promoter:81 nt. Size=34 nt. Delta G= -5.60 kcal/mol
Anti-antiterminator: Distance from promoter:58 nt. Size=32 nt. Delta G= -9.90 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaca-taattt. It has a score value of 67.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgacaacagccgcccaaagccgctaatttagcccttcaccgagtTCAGAAGTAGCTCAGTCGGTAGAGCAAGCGGC
TGTTAACCGCTGGGTCGGGGGTTCGAGTCCCTCCTTCTGAGCCAatctttttagattgtgattaaga
aaaccaagtccataagacttggtttttttatttttaccccctgtaaaattcgatagcatggaatctccaaaaggagtttgccATG
Bd0095 --- Bd0096
Gene: Bd0095 GI: 42521740 BI number: Bd0095 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critica
Gene: Bd0096 GI: 42521741 BI number: Bd0096 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
C tt t
T C t t a a
GC ta c a
AT cg cg
GC ta ta
C | at gc
T | At at
T | Cg at
GC | t cg
GT | g cg
GT C a at
GC G t at
GT A t at
CG G a at
TA Ta gt
G G Cg at
GC Ta at
GC Ta ta
tttttaccccctgtaaaattcgatagcatggaatctccaaaaggagtttgccATG
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