Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:190 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-17.20 kcal/mol
Antiterminator: Size=72 nt. Delta G= -8.00 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CATcccgtctcctcgtgcaagttccgctttatactcgacagaaaattcgcatcaacaagtatgagattaccaagggaatattccaccgcctcggtgga
gatgttccttttgtggtttggatgaaacgttcgctgaggttccgggcgctctttgttgctgtgggagcggatttgcggcggttaccattgaatggctgta
ataagccgcggttggatggaccctctgatgatctggtacggaacacttgcctggcacagtcattgatcttcaggtctttgcaaacttaaacaggagataa
caATG
Bd0204
Gene: Bd0204 GI: 42521834 BI number: Bd0204 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
aa
g a
a a
c t
at
gc
cg
| c
| a
| t
| c
| a
| a
| c
| a
ta
cg
at
ta
at
tg
ta
| g
| a
| t
| t
| a
aa | c
c g | c c
g t | a c t
t t ta gc
gc cg cg
Gc g | cg
Tg cg at
A c cg cg
a t ta cg
c | ta ta
at gt | g
at | a ta
ta at at
at at tg
| a c c at
gc gc at
at ta gc
gc gc gc
ttttgtggtttggatgaaacgttcgctgaggttccgggcgctctttgttgctgtgggagcggatttgcggcggttaccattgaatggctgtaataagccgcggttggatggaccctctgatgatctggtacggaacacttgcctggcacagtcattgatcttcaggtctttgcaaacttaaacaggagataacaATG
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