                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:210 nt.     Distance to run of Ts=2 nt.   Size=18 nt.     Delta G= -6.70 kcal/mol
Antiterminator: Size=40 nt.     Delta G=-10.83 kcal/mol
Anti-antiterminator:   Size=49 nt.     Delta G=-16.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGCTAGCCAAAGGTAGGCTTTGCGCGGATCCGCAGCTTTCATGTTTTCGTAGTGTTCC
CACGGCTGTGGCGGAAGAGTCACAAGTTTGTTGTCAATCTGGTGATGGAAGAAAGTTT
CCCCAAGATCGGTATCCCACAAAGTACCATCCGCATCAAAGGCGGCCACAGGTGCAGA
ATCCTGTTTTAAAACTTGGTCCAGTGTCGTATTTATGCGGTTCCAAATGTCGGTGGAA
TAGTCTTTGTATTTCATagtgtcttagtatgaaatatgaaaagtaaaatgacaaggagacctgagggcATG

    Bd0206 --- glpD Gene: Bd0206     GI: 42521836     BI number: Bd0206     GOG: -------     Description: hypothetical protein predicted by Glimmer/Critica Gene: glpD     GI: 42521837     BI number: Bd0208     GOG: COG0578     Description:            TC CC       T  C G  G       GC T  C       TA A  A       GC cG       A  | gC       T  | gT       G  | gT       C  | aT       T  | gC       T  | tA       T  | c  T      T  | cG       G  | aT       T  | gT       A  | aT       C  | gT       T  | gC       T  |       AA |  G       TG       G  G |  T       CG       G  A |  A       GC        CG a  G       AT        GT aT        CG        GC cG        GT        TA aT        CG        GC gT        CG        TA                         AGTTTGTTGTCAATCTGGTGATGGAAGAAAGTTTCCCCAAGATCGGTATCCCACAAAGTACCATCCGCATCAAAGGCGGCCACAGGTGCAGAATCCTGTTTTAAAACTTGGTCCAGTGTCGTATTTATGCGGTTCCAAATGTCGGTGGAATAGTCTTTGTATTTCATagtgtcttagtatgaaatatgaaaagtaaaatgacaaggagacctgagggcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0578 Glycerol-3-phosphate dehydrogenase ... can be seen here     ..................................................................................................................