                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:63 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -6.30 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -9.60 kcal/mol
Anti-antiterminator:   Size=34 nt.     Delta G= -7.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGGCGGAGCCCAGCAGAGTGCTGGTCGGTAAAAGAATCAAAGAGGTGATAAGAAATGT
CAGCGCATTTTCCTTCAGGAAGGTCAAATCCCGGGGCCAGGCTTTAAAAGTCAGATAA
CGATTGGTCACTTCCTGTAAAAACAGCAGGCCGAAGGAAATCAGCAGGGCGCTTACAT
AAGGAGTAAAACGCACCGCCAGAACGAACAGGGTGGCCGTACAGCCCAGAAAAAGGCT
GTTTTTCCAGTCCGCTTTTAATTGAATCAAGGCTTGTTTAAGGGAATTCATttctctatgct
aaggcaATG

    Bd0227 Gene: Bd0227     GI: 42521853     BI number: Bd0227     GOG: -------     Description: hypothetical protein predicted by Glimmer/Critic             G           C  A           A  A           A  C           G  A   A       A  G A  G       CG T  G       CG A  A       GT CG        CG AT        CG TA       A  C TA       C  | |  A       GC C  A       CG GC        AT        AA CG       A  A      G  A GC       A  C      A  A |  A      A  A      C  A GC        TG        CG GC        GC        CG A  |      A  |       GC CG        GC        AT GC        GC        CG                         TTTTTCCAGTCCGCTTTTAATTGAATCAAGGCTTGTTTAAGGGAATTCATttctctatgctaaggcaATG     ..................................................................................................................