Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:160 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G=-11.70 kcal/mol
Antiterminator: Size=46 nt. Delta G=-11.00 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G=-14.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGGAATCCGATTCTTCTCAGTTGAAGTTTGCCATTTAGttgtaaatcacggttggaaacaggtggtgcattt
ttttctggcatcactgttgctttaacagtcctTTGCCCACCAGCGGGGCCACAACGGCTTCGTTTGTTTTA
AGAAAGGACACCACTATGAGAAAAATCGTATTTTCCGGCCTGCTCATAGCCACCTTGT
TTCGTTGTTCAGGCGTTTACTGTTAGggctttacagcaagaactgtcggggttgtctccggctctggcattgattcctggc
tctatggcggtcatcacgGTG
Bd0351
Gene: Bd0351 GI: 42521971 BI number: Bd0351 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
t
t t
t t
t c
t t cc
a g t t
cg gT
gc aT
ta cG
gt a C
gc a C
ta t C
g | t A
gc t C
at c |
cg gC
at tA
at tG A
| g gC C A
| c tG A C
at cG CG
gt a G CG
gt c | GC
ta t | GT
ta a | GT
gc cG GC
g a gC CG
cg gC GT
at tA AT
TGTTTTAAGAAAGGACACCACTATGAGAAAAATCGTATTTTCCGGCCTGCTCATAGCCACCTTGTTTCGTTGTTCAGGCGTTTACTGTTAGggctttacagcaagaactgtcggggttgtctccggctctggcattgattcctggctctatggcggtcatcacgGTG
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