Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:126 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-12.10 kcal/mol
Antiterminator: Size=42 nt. Delta G= -4.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGTTGCTGGCTCAGGCTCAAAAATGGTTCACGATTGCAGAGTGGATTGTTTGGGGCCC
GATGGTGGCTCTGGTTCTGACTCTGACCCTGTTGATCAACATCGGTCTTGCAGTCCGC
GACGCCTTCGACTCCAAAATGTAGataaaaaacaggtggcttaaggccacctttttttatccccaaaaaggtgcctggtgac
tttttacacctacaccgcatcattctttctgtctttaaagttgatcccccggtggcctctcgataaggtccaaacaattaccactctattcctgggggat
tcATG
Bd0361
Gene: Bd0361 GI: 42521978 BI number: Bd0361 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
AA
C A
C A
T T
CG
AT
G A
CG
Ta
| t
| a
| a
| a
| a
| a
| a
| c a
Ta t a
Cg t g
Cg cg
Gt gc
Cg gc
A | ta
G | gc
Cg gc
Gc at
ttttttatccccaaaaaggtgcctggtgactttttacacctacaccgcatcattctttctgtctttaaagttgatcccccggtggcctctcgataaggtccaaacaattaccactctattcctgggggattcATG
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