Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:129 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-14.70 kcal/mol
Antiterminator: Size=69 nt. Delta G= -9.52 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -6.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGCCTGCATCATGGGATCCATGATGGCCTCCCACACAATCCAGGATTTCTCTGTGAAA
GCTCTGGCGAAAGTGACTTTGGGCGATCTTGAAAAACGCCTGACTGAGTACAAGAAAG
TCATCACTGTTTAAattcctgtcaaaggcctccactctggaggcttttttctttgttaagatgtcttgtgatttgaagataaattgaaaa
atgtttgttattgaaagtccggtttttagacaagaagcaaacaattgttgtttagtcctcttttgggaagatctgcgattccgatgcgtagagtATG
Bd0735
Gene: Bd0735 GI: 42522319 BI number: Bd0735 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
C
A A
T A
G G
A A
G A
TA
CG
AT
GC
TA
C T
C C
G A
C C
A T
A G
G A |
T A AT
T A AT
C A GT
T A TA
A A TA
GC C a t
CG T t c c
GC At a t
GC Gc cg
GT | c cg
| G C t ta
| A G g cg
| C Gt cg
T T Gc gc
TG Ta gt
TA Ta at
CG Ta at
AT Cg at
ttctttgttaagatgtcttgtgatttgaagataaattgaaaaatgtttgttattgaaagtccggtttttagacaagaagcaaacaattgttgtttagtcctcttttgggaagatctgcgattccgatgcgtagagtATG
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