Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:55 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-20.80 kcal/mol
Antiterminator: Size=68 nt. Delta G= -9.42 kcal/mol
Anti-antiterminator: Size=18 nt. Delta G= -5.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAGCTTGAAAAAGATCTTAACTCTGAAGTGGTTAAGAAACGTATCGAAGCGGACATGG
AAGAAGCTCGTAAATTCAACTTCTCCGGTACTCCAGGCTTCCTGATCAACGGTGTTTC
CCTGCGTGGCGCTTATCCATTCGCTGATTTCAAAGAAATCATCGACCGTCACTTGGCT
GAAGCGAAGTAAtctttcctgaagattgaacttcaaaaacccacagtttgaaaaaactgtgggttttttatttgcgcggtacaggtccagc
cactaaagtaatcgtaaatacaccaaggagttcccATG
Bd0786
Gene: Bd0786 GI: 42522365 BI number: Bd0786 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
c
c t
tg
ta
ta
cg
ta
At
At
| g
| a
Ta
Gc
At
At
Gc
C a
G a
A a
A a
G a
T c
C |
Gc aa
Gc g a
Ta ta
| c ta
Ta ta
Cg gc
At at
GA C | cg
T A T | at
CG G | cg
GC C | cg
G G C | cg
TA At at
TA Gt at
CG Cg at
AT Ta at
ttatttgcgcggtacaggtccagccactaaagtaatcgtaaatacaccaaggagttcccATG
..................................................................................................................