Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:200 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-11.60 kcal/mol
Antiterminator: Size=41 nt. Delta G= -9.10 kcal/mol
Anti-antiterminator: Size=29 nt. Delta G= -3.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCGCGGGAAACCGTCGCAAGAGGTGTCTAATGGGTCGTAAAGATAGCCGCTTTTATCC
AGCACCATGCGCGCAGCCGCTGTTTTGCGGTCCGCAGTTTTTTGCAGAGACGTACACT
GAACCAAGGAAAAAGCCAGAACCAGCCAGAATAAAACGCGCATgatatccccatgaagaagtccttat
tcaattatgggggcttttatgcccttatcaaatgcaaattttccataatcattcctttgttggggttggttttcccgatatgccggggtccggtgtcatc
atcatagggaggcctcATG
Bd0815
Gene: Bd0815 GI: 42522391 BI number: Bd0815 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
C
C A
A T
CG
GC
A G
C C
G C G TT
A C T C G T
T C A | T T
A G T | CG
GC T | GC
AT T | CG
AT TA CG
AT CG GT
T T GC A C
G | C C C |
C | CG G |
TA GC C |
GT AT GC
GC TG CG
GC AT GC
TA GT TA
GTTTTTTGCAGAGACGTACACTGAACCAAGGAAAAAGCCAGAACCAGCCAGAATAAAACGCGCATgatatccccatgaagaagtccttattcaattatgggggcttttatgcccttatcaaatgcaaattttccataatcattcctttgttggggttggttttcccgatatgccggggtccggtgtcatcatcatagggaggcctcATG
..................................................................................................................