                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:112 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-18.60 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -7.10 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G= -9.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAAAAACGAAGAGTATTTGAAGCGTCCTGACATCATGGAAGCGGAAAATGTTCTTCTG
GATCTGATTCAGCTTGAGGACGGGAAATCCTTGGTGCCTCAGCAGAAACAGGCCAACG
CCAAGTAGTGTGATTTGAGGAAACGTTTGTTGTTGTTGAAGCCCGGAGCCACAGTCTC
CGGGCTTTTTTTATTTGTCTTCGCGAACAGAAGTTCGGTCCAGAAATGTATTAAGGGG
TCCAGAGTGGATGACTTGTAATTGTTAAAAAAAATTGACGTACGACACACtgaaacagtggag
ggtttATG

    Bd0969 --- Bd0970 Gene: Bd0969     GI: 42522533     BI number: Bd0969     GOG: -------     Description: conserved hypothetical protein Gene: Bd0970     GI: 42522534     BI number: Bd0970     GOG: -------     Description: putative secreted esteras AA C  C CG GC GC        GT A  A      T  T C  A      T  G A  G      T  T A  T       GT A  A       CG G  G       AT AT        AT CG       |  G GT       |  A        C |  G      |  A      A  A |  A      A  G      C  G |  T       GC       C  T |  T       GC        GC AT       A  |       AT CG        GC        GC TA        TG        GC CG        TG        CG CG        TA        CG G  A      |  G       CG T  A      A  C       GC G  A       GC        AT GC        TA        AT TG        GC        GT                         TTTTATTTGTCTTCGCGAACAGAAGTTCGGTCCAGAAATGTATTAAGGGGTCCAGAGTGGATGACTTGTAATTGTTAAAAAAAATTGACGTACGACACACtgaaacagtggagggtttATG     ..................................................................................................................