Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:210 nt.     Distance to run of Ts=2 nt.   Size=14 nt.     Delta G= -7.30 kcal/mol
Antiterminator: Size=37 nt.     Delta G=-12.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TATTCATGTCCACGGATGTGATGGCTGAAAACGGGGCCTGGCTGTTTTTCAAGCCCAG
CCACAAACTGGCCGCACGGCCGAGCTTTTTTGAATTCTGCAAAATGCGCACGGGGCCT
TCGGTCGGGGGCACCACGCAGCCTTTTTCTGCCACAACGATAACTTCATAGTTTAGCG
GGAACTTGGCAAAAAAACCGCGCAGATCGCGCAGGTACGCCGGAAGCATTTCAGGCTG
TTCCAAATAAACAATCAGTGAGCAGTGCGGGGTTGACACGGAAGATTCCATCTTTACG
ATAGTTAACAATG

    Bd1123 --- mltE --- mltD_lrep_1


Gene: Bd1123     GI: 42522671     BI number: Bd1123     GOG: COG4745     Description: putative membrane-bound mannosyltransferase
Gene: mltE     GI: 42522672     BI number: Bd1124     GOG: -------     Description: putative soluble lytic transglycosylase
Gene: mltD_lrep_1     GI: 42522673     BI number: Bd0529     GOG: COG0741     Description: membrane-bound lytic murein transglycosylase D precurso


  C
T  A
T  A
T  G
T  C
T  C
 GC
 TA
 CG
 GC
 GC
 TA
|  C
|  A
|  A
|  A       CA
|  C      G  C
|  T       CG
 CG        CG
 CG        GC
 GC        GC
 GC        TG
            AGCTTTTTTGAATTCTGCAAAATGCGCACGGGGCCTTCGGTCGGGGGCACCACGCAGCCTTTTTCTGCCACAACGATAACTTCATAGTTTAGCGGGAACTTGGCAAAAAAACCGCGCAGATCGCGCAGGTACGCCGGAAGCATTTCAGGCTGTTCCAAATAAACAATCAGTGAGCAGTGCGGGGTTGACACGGAAGATTCCATCTTTACGATAGTTAACAATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[O] COG4745 Predicted membrane-bound mannosyltransferase ... can be seen here
[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) ... can be seen here

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