Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:127 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-23.40 kcal/mol
Antiterminator: Size=74 nt. Delta G=-16.10 kcal/mol
Anti-antiterminator: Size=31 nt. Delta G=-11.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCCTGGTGAAGCTGAAGATCACAGCTGGAAATCCCACTCCACAACCTCTTCCGGGTTG
GGGGCGATGGCAGAGGCTTTGAAGGGCCTTAACATCAAGAAGAACTAGttgtttcattttgata
ttctgaagttgtcaaaagccctttgggtctaaacccaaggggcttttttttgtggctactttagtttggaaaacagtttttcatcatttttccggttaat
cctcaataaaactgttccacgagccgataagtgtgtcagaagcgaacccatttgaacgtctatcggggtcaaggaatcATG
Bd1199
Gene: Bd1199 GI: 42522734 BI number: Bd1199 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
G
A t
T t
Cg
At
At
Gt
| c
A a
At
Gt
At
At
Cg
Ta
At
| a
| t
| t
| c
| t
| g
| a
| a
Cg
At
At
Tg ta
GA | t c a
T A | c ta
TG | a gc
TG | a gc
CG T a gc
GC C a ta
GC Cg ta
AT Gc tg
GT Gc cg
A A Gc cg
C A At cg
G | At gc
GC G t at
TA T g at
AT Tg at
GC Tg at
ttttgtggctactttagtttggaaaacagtttttcatcatttttccggttaatcctcaataaaactgttccacgagccgataagtgtgtcagaagcgaacccatttgaacgtctatcggggtcaaggaatcATG
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