Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:120 nt. Distance to run of Ts=0 nt. Size=17 nt. Delta G= -9.20 kcal/mol
Antiterminator: Size=45 nt. Delta G= -9.30 kcal/mol
Anti-antiterminator: Size=32 nt. Delta G= -9.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGCGCTTACGTTCCCTGCCACGATGAAAAACGTCTGAACGTGAAGCAGGCAGAATTCT
TCGACAACGAGGAAGTCTGGAAAGCTCTGCAAGTCAGCGACAGCCCGGAAAACGGCGC
CTGGGACGGATAGtcgtcttcaagtcaggtaaatcctacaaaaccggctaccacagccggttttgtcgttttggtgttcgccatgaaattt
cgaacagttcgtccttcaaaaaggcttaaactcgggaaaacctcgcaattgacatatacatgtccaatttgagttggtaagtgtttttgccaaATG
Bd1219 --- Bd1218
Gene: Bd1219 GI: 42522751 BI number: Bd1219 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critica
Gene: Bd1218 GI: 42522750 BI number: Bd1218 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
a
a a
t t
gc
gc
at
TA c |
A G ta
Gt gc
Gc a a
Cg a |
At c |
Gc ta
Gt ta
| t c a
| c t c
| a gc c
| a cg c a
| g tg a c
| t Gc ta
Gc At cg
Ta Ta gc
Cg A | gc
Cg Gc cg
Gt Gc cg
ttttgtcgttttggtgttcgccatgaaatttcgaacagttcgtccttcaaaaaggcttaaactcgggaaaacctcgcaattgacatatacatgtccaatttgagttggtaagtgtttttgccaaATG
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