                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:120 nt.     Distance to run of Ts=2 nt.   Size=24 nt.     Delta G= -9.50 kcal/mol
Antiterminator: Size=26 nt.     Delta G= -4.10 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G=-12.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAAACTGTGGCATtccagaacgtccttaataaacagccagcactaatataacaaagacagtccgaagcgacgagcagattgtggaagctga
atttgccgataaaaccggcaagaatttgggcataaattcggaaaggtcggtcaagcgggatttttggaccgacaaaagtccagtgttttggcctgcttaa
agtgtctcaaaaaatatttgcaactggccctaaattctcagcgtgatacgccgataggtacaaagtgagtcaaataggctttgttaatgtttcaaaaggg
gaggactaaATG

    Bd1238 Gene: Bd1238     GI: 42522768     BI number: Bd1238     GOG: -------     Description: hypothetical protein predicted by Glimmer/Critic gc g  a gt ta ta ta at at gc a  | a  | c  | g  | g  | cg cg        gc a  a      a  g a  a      a  g a  a       cg        cc a  g       ta       a  g tg        gt       g  a at        gt        gc gc       |  t       ta cg       |  t       ta cg       |  t       ta |  t      |  g       ta gc        cg        tg ta        ta        at ta        gc        gc tg        gc        gc                         agtgttttggcctgcttaaagtgtctcaaaaaatatttgcaactggccctaaattctcagcgtgatacgccgataggtacaaagtgagtcaaataggctttgttaatgtttcaaaaggggaggactaaATG     ..................................................................................................................