Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:142 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-25.90 kcal/mol
Antiterminator: Size=67 nt. Delta G=-12.35 kcal/mol
Anti-antiterminator: Size=50 nt. Delta G=-14.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAAACCGGTGGACCGGATTACTTAAAACAGTACATGGAACCAGCGTGCGTGACTGAGA
ACACACTTCGTCGCGGCTTTGCTCCGGCGGAAGAATAGtcctcctcaaaaaaaagtatcatctcaaagagcc
cccggccgaaaccgggggctcttttttttaaacctgaccagtccgtgaacactccgggcaaagacttcactctggcaccagcgatccccccttatttacg
agctgagctggcccagcctgtgcaactgcagggccgttgaatacatcccctagcaacccgaaggacctttATG
Bd1249
Gene: Bd1249 GI: 42522776 BI number: Bd1249 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
A
A T
G A
A G
At
Gc
Gc
C t
Gc
Gc
| t
| c
| a
| a
| a
| a
| a
| a
| a
| a
CA | g
A C | t
A A | a
GC | t
AT | c
GT | a
T C | t
CG | c
AT | t
GC | c
TG | a ga
GC | a c a
CG C a c a
G | Cg gc
TG Ta gc
GC Cg cg
C T Gc cg
GT | c cg
AT | c cg
CG T c cg
C C T c gc
A | Tg at
AT Cg gc
GC Gc at
GC Gc at
TG Cg at
tttttaaacctgaccagtccgtgaacactccgggcaaagacttcactctggcaccagcgatccccccttatttacgagctgagctggcccagcctgtgcaactgcagggccgttgaatacatcccctagcaacccgaaggacctttATG
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