Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:8 nt. Distance to run of Ts=3 nt. Size=27 nt. Delta G= -7.20 kcal/mol
Antiterminator: Size=42 nt. Delta G= -7.00 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -6.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGAAAAAAACAAACTCTTCGAAGACTCTTGGACAGAAATTAAAACTCACTGAttgtgggtt
tgttcgttgccgggtggcgcggggtttggctggggtcttgagggatcccgcctccgcggtacaccatccaggcgccggcaaagaccgctgcgtcgggctc
cctcaagtccccatccaaattgttccagtcggaaatagctaataactatcaatgtgttcttaactgcgcaggtgcacgacgatgccctttggaaccgatg
tctttgtgatgggattttcggaagttgtttctgaattgaTTG
Bd1416
Gene: Bd1416 GI: 42522933 BI number: Bd1416 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
ta
t a
c c
t t
tg
gc
tg
gc
ta
a |
a |
c | cc
t | g c
a | t t
t | at
c | gt
a | cg
a | | g
t | | a
a | | a
a | a c tg
tg gc g a
cg cg t t
gt | a tg
a g at tg
t c cg cg
a a gt ta
a | t c gt
a | gt | t
g | gt t t
gc at at
cg cg gc
ta gt cg
gc cg cg
aagttgtttctgaattgaTTG
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