Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:207 nt. Distance to run of Ts=0 nt. Size=36 nt. Delta G=-11.00 kcal/mol
Antiterminator: Size=36 nt. Delta G=-11.00 kcal/mol
Anti-antiterminator: Size=31 nt. Delta G= -8.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AATAACAAAGCCCACTTCAAACTCCAAAGTGGCCAGTTGCAGCAAGTCCGCCTCGCTG
GTGGTCAGAACACGATCGATCGCTGGATGATTTTTTAGCAGATGATGAGCTGGCGCAT
CGGTCACCCACGTAATCATGGATCCCGGGTACTTTCTTTTGATGGCCTTCAGCAAACT
GGTACTGCGAACCACGGCTCCCAAAGCGCCCAGATGAACAATCAACAAAGAACACGTC
GGCACATCTTTTTGCGCACAGGAATCGTCGCACACCGAATTTTTGGAGCAGGGTTTGT
AACCGGAAAAGTG
Bd1502
Gene: Bd1502 GI: 42523009 BI number: Bd1502 GOG: ------- Description: putative cAMP-dependent protein kinas
C
C G AC
T C C G
G GC A A
A T AT AT
C T A C GC
CG CG A |
GC GC CG
G A AT TA
TG CG GT
GC G G GC
TA T | TG
G A T | GC
A G G | GT
A | AT TG
A | CG CG
AT CG | A
GC GT GT
GC GC CG
CG TA TA
TTTTTTAGCAGATGATGAGCTGGCGCATCGGTCACCCACGTAATCATGGATCCCGGGTACTTTCTTTTGATGGCCTTCAGCAAACTGGTACTGCGAACCACGGCTCCCAAAGCGCCCAGATGAACAATCAACAAAGAACACGTCGGCACATCTTTTTGCGCACAGGAATCGTCGCACACCGAATTTTTGGAGCAGGGTTTGTAACCGGAAAAGTG
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