Gene putatively regulated by attenuation in B_bacteriovorus
Characteristics of the secondary structures
Terminator: Distance to gene:30 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-17.20 kcal/mol
Antiterminator: Size=74 nt. Delta G=-18.95 kcal/mol
Anti-antiterminator: Size=57 nt. Delta G=-22.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GACCAACAAGGTCAAAAACGCTACACGACTGAAATCGTGGCTTCCACAGTTCAGTTCC
TGGGTGCAGCTGGTGGCGAAAAGTCCTCTGGCAACTCTATGGGTAACGACGATTTCAA
CTTCCAAGATTTCGGTCCGGAGCCTAGCTTCAACTCTAACGATGAAATTCCATTCTAA
cggcggcagccggcagagctggagcgtcggagacgcgtaagctgaagcagcattaaattaagcctaaagccctgaagtaattcggggctttttttttgcc
ttttaagttcttataattaaagggctATG
Bd1581 --- Bd1580
Gene: Bd1581 GI: 42523086 BI number: Bd1581 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critica
Gene: Bd1580 GI: 42523085 BI number: Bd1580 GOG: ------- Description: hypothetical protein predicted by Glimmer/Critic
g
g a
cg
ta
gc
cg
gc
a g
g t
g a
ta
cg
gc
at
gc | g
g a | a
cg | a
gc | g
gc | c
cg | a
A g | g
A c | c
Ta | a
Cg | t
Ta | t
Tg | a
| c | a
At | a
Cg | t
Cg | t
Ta g a
T g a a
A | cg
A | gc ta
A | gc g a
Gc c t at
Tg c a at
At g a gc
Gc a a tg
Cg cg cg
A | gc cg
A | gc cg
T | c | gc
Cg gc at
Ta gt at
Cg cg at
ttttttgccttttaagttcttataattaaagggctATG
..................................................................................................................